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Journal Article 75

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Antibiotic resistance genes 10

Antibiotic resistance genes (ARGs) 3

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bioinformatics analysis 2

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Data mining of microarray for differentially expressed genes in liver metastasis from gastric cancer

Ling XU MM, Feng WANG MM, Xuan-Fu XU MD, Wen-Hui MO BM, Rong WAN MD, Chuan-Yong GUO MD, Xing-Peng WANG MD,

Frontiers of Medicine 2010, Volume 4, Issue 2,   Pages 247-253 doi: 10.1007/s11684-010-0027-4

Abstract: In order to find metastasis-related genes and abnormal signal transduction pathway of high-invasive gastriccancer with liver metastasis were collected for microarray detection; up-regulated or down-regulated genesFunctional analysis of differentially expressed genes revealed that a variety of biological pathways,mining allows to quickly identify a series of special signal transduction pathways involving abnormally expressedgenes.

Keywords: gastric carcinoma     metastasis     signal transduction     gene chips    

Identification of differentially expressed miRNAs associated with chronic kidney disease–mineral bone

Kyung Im Kim, Sohyun Jeong, Nayoung Han, Jung Mi Oh, Kook-Hwan Oh, In-Wha Kim

Frontiers of Medicine 2017, Volume 11, Issue 3,   Pages 378-385 doi: 10.1007/s11684-017-0541-8

Abstract:

The purpose of this study is to characterize a meta-signature of differentially expressed mRNA inmicroRNA (miRNA) in CKD–mineral bone disorder (CKD–MBD) and confirm the changes in these genesThrough a computational analysis, a meta-signature that characterizes the significant intersection of differentiallyexpressed mRNA and expected miRNAs associated with CKD–MBD was determined.Differentially expressed miRNAs associated with CKD-MBD were identified through a computational analysis

Keywords: chronic kidney disease     microRNA     mineral bone disorder     uremia    

Transcriptome analysis of wheat grain using RNA-Seq

Liu WEI,Zhihui WU,Yufeng ZHANG,Dandan GUO,Yuzhou XU,Weixia CHEN,Haiying ZHOU,Mingshan YOU,Baoyun LI

Frontiers of Agricultural Science and Engineering 2014, Volume 1, Issue 3,   Pages 214-222 doi: 10.15302/J-FASE-2014024

Abstract: of the 61393 unigenes involved in the biological processes of the grain showed that there were 7355 differentiallyexpressed genes upregulated in the grain library.Gene ontology enrichment and the Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysisproducts and transcription factors associated with carbohydrate and protein metabolism were abundantly expressedThese results contribute to excavate genes associated with wheat quality and further study how they interact

Keywords: transcriptome analysis     wheat grain     differentially expressed genes     enrichment analysis    

iTRAQ-based quantitative proteomic analysis on differentially expressed proteins of rat mandibular condylar

Liting Jiang,Yinyin Xie,Li Wei,Qi Zhou,Ning Li,Xinquan Jiang,Yiming Gao

Frontiers of Medicine 2017, Volume 11, Issue 1,   Pages 97-109 doi: 10.1007/s11684-016-0496-1

Abstract: expression and putative signaling in vivo, we evaluated the structural changes of MCC and differentiallyexpressed proteins induced by reducing functional loading in rat MCC at developmental stages.A total of 805 differentially expressed proteins were then identified.

Keywords: condylar cartilage     mechanical loading     proteomic analysis     iTRAQ     bioinformatics analysis    

Annotation and validation of genes involved in photosynthesis and starch synthesis from a

Yang ZHANG,Xin CHEN,Haiyan WANG,Zhiqiang XIA,Peng LING,Wenquan WANG

Frontiers of Agricultural Science and Engineering 2016, Volume 3, Issue 4,   Pages 308-320 doi: 10.15302/J-FASE-2016113

Abstract: In total, 5013 high-quality expressed sequence tags (ESTs) and 1259 unigenes were obtained.From these, 24 differentially expressed genes involved in starch metabolism and photosynthesis were identified

Keywords: Manihot esculenta     expressed sequence tag     unigene     pathway     expression pattern    

4-1BBL expressed by eukaryotic cells activates immune cells and suppresses the progression of murine

Hui QIU, Hui ZHANG, Zuohua FENG

Frontiers of Medicine 2009, Volume 3, Issue 1,   Pages 20-25 doi: 10.1007/s11684-009-0006-9

Abstract: The function of 4-1BB/4-1BBL expressed by the immune cells has been the focus for many tumor immunotherapyIn this study, 4-1BBL was expressed in non-immune cells and non-tumor cells, and the role of 4-1BBL inThe study demonstrated that the molecule 4-1BBL expressed by BHK cells could enhance the proliferation

Keywords: 4-1BB ligand     tumor immunotherapy     tumor microenvironment    

Soluble triggering receptor expressed on myeloid cell-1 (sTREM-1): a potential biomarker for the diagnosis

Changlin Cao, Jingxian Gu, Jingyao Zhang

Frontiers of Medicine 2017, Volume 11, Issue 2,   Pages 169-177 doi: 10.1007/s11684-017-0505-z

Abstract: An example of these biomarkers is triggering receptor expressed on myeloid cell-1 (TREM-1), which isa cell surface receptor expressed on monocytes/macrophages and neutrophils.

Keywords: soluble triggering receptor expressed on myeloid cells-1     infectious diseases     diagnosis and prognosis    

Alternative splicing of inner-ear-expressed genes

Yanfei Wang,Yueyue Liu,Hongyun Nie,Xin Ma,Zhigang Xu

Frontiers of Medicine 2016, Volume 10, Issue 3,   Pages 250-257 doi: 10.1007/s11684-016-0454-y

Abstract: subject to inner-ear-specific alternative splicing, and as a result, Cdh23(+68) is only expressed

Keywords: alternative splicing     inner ear     hearing loss     hair cells    

Metagenomic analysis on resistance genes in water and microplastics from a mariculture system

Frontiers of Environmental Science & Engineering 2022, Volume 16, Issue 1,   Pages 4-4 doi: 10.1007/s11783-021-1438-y

Abstract: Mariculture systems have been observed to host microplastics and antibiotic resistance genes (ARGs).However, more information on proliferation of ARGs and metal resistance genes (MRGs) in mariculture system

Keywords: Antibiotic resistance genes     Metal resistance genes     Metagenomic analysis     Microplastics     Mariculture    

Distribution and removal of antibiotic resistance genes during anaerobic sludge digestion with alkaline

Mengli Wang, Ruying Li, Qing Zhao

Frontiers of Environmental Science & Engineering 2019, Volume 13, Issue 3, doi: 10.1007/s11783-019-1127-2

Abstract:

Sludge digestion is critical to control the spread of ARGs from wastewater to soil.

Fate of ARGs in three pretreatment-AD processes was investigated.

UP was more efficient for ARGs removal than AP and THP in pretreatment-AD process.

The total ARGs concentration showed significant correlation with 16S rRNA gene.

The bacteria carrying ARGs could be mainly affiliated with Proteobacteria.

Keywords: Tetracycline resistance genes     Sulfonamide resistance genes     16S rRNA gene     Sludge pretreatment     Anaerobic    

Environmental effects and risk control of antibiotic resistance genes in the organic solid waste aerobic

Frontiers of Environmental Science & Engineering 2021, Volume 15, Issue 6, doi: 10.1007/s11783-021-1415-5

Abstract:

• ARGs were detected in livestock manure, sludge, food waste and fermentation dregs.

Keywords: Antibiotic resistance genes     Organic solid waste     Aerobic composting     Livestock manure     Sludge    

ultraviolet/chlorine process on microbial community structure, typical pathogens, and antibiotic resistance genes

Frontiers of Environmental Science & Engineering 2022, Volume 16, Issue 8, doi: 10.1007/s11783-022-1521-z

Abstract:

• UV/chlorine can effectively remove VBNC pathogens, ARGs and MGEs in reclaimed water.

Keywords: UV/chlorine process     Pathogen     Antibiotic resistance genes     High-throughput qPCR     Reclaimed water    

Development of the expressed immunoglobulin μ chain repertoire during maturation of mice B cells

Jingwen LIANG,Yingfeng LUO,Yi SUN,Meng LEI,Bing ZHANG,Songnian HU,Yaofeng ZHAO

Frontiers of Agricultural Science and Engineering 2014, Volume 1, Issue 3,   Pages 201-213 doi: 10.15302/J-FASE-2014017

Abstract: frequencies when three B cell populations were compared, but the usage profile of the V D, and J genesAll these data indicated that the expressed Ig μ chain repertoire, especially the repertoire of CDRH3

Keywords: repertoire     complementarity determining region 3 of the IgH chain (CDRH3)     immunoglobulin     heavy chain     variable region    

Distribution of antibiotic resistance genes and their association with bacteria and viruses in decentralized

Frontiers of Environmental Science & Engineering 2022, Volume 16, Issue 3, doi: 10.1007/s11783-021-1469-4

Abstract:

• Distribution of ARGs in decentralized sewage facilities were investigated.

Keywords: Decentralized sewage treatment facilities     Antibiotic resistance genes     Virus     Metagenomics     Network    

Research progress in pathogenic genes of hereditary non-syndromic mid-frequency deafness

Wenjun Xia,Fei Liu,Duan Ma

Frontiers of Medicine 2016, Volume 10, Issue 2,   Pages 137-142 doi: 10.1007/s11684-016-0449-8

Abstract: Only four genetic mid-frequency deafness genes, namely, DFNA10 (EYA4), DFNA8/12 (TECTA)This review summarizes the research progress of the four genes to draw attention to mid-frequency deafnessgenes.

Keywords: hereditary non-syndromic hearing loss     mid-frequency hearing loss     deafness genes    

Title Author Date Type Operation

Data mining of microarray for differentially expressed genes in liver metastasis from gastric cancer

Ling XU MM, Feng WANG MM, Xuan-Fu XU MD, Wen-Hui MO BM, Rong WAN MD, Chuan-Yong GUO MD, Xing-Peng WANG MD,

Journal Article

Identification of differentially expressed miRNAs associated with chronic kidney disease–mineral bone

Kyung Im Kim, Sohyun Jeong, Nayoung Han, Jung Mi Oh, Kook-Hwan Oh, In-Wha Kim

Journal Article

Transcriptome analysis of wheat grain using RNA-Seq

Liu WEI,Zhihui WU,Yufeng ZHANG,Dandan GUO,Yuzhou XU,Weixia CHEN,Haiying ZHOU,Mingshan YOU,Baoyun LI

Journal Article

iTRAQ-based quantitative proteomic analysis on differentially expressed proteins of rat mandibular condylar

Liting Jiang,Yinyin Xie,Li Wei,Qi Zhou,Ning Li,Xinquan Jiang,Yiming Gao

Journal Article

Annotation and validation of genes involved in photosynthesis and starch synthesis from a

Yang ZHANG,Xin CHEN,Haiyan WANG,Zhiqiang XIA,Peng LING,Wenquan WANG

Journal Article

4-1BBL expressed by eukaryotic cells activates immune cells and suppresses the progression of murine

Hui QIU, Hui ZHANG, Zuohua FENG

Journal Article

Soluble triggering receptor expressed on myeloid cell-1 (sTREM-1): a potential biomarker for the diagnosis

Changlin Cao, Jingxian Gu, Jingyao Zhang

Journal Article

Alternative splicing of inner-ear-expressed genes

Yanfei Wang,Yueyue Liu,Hongyun Nie,Xin Ma,Zhigang Xu

Journal Article

Metagenomic analysis on resistance genes in water and microplastics from a mariculture system

Journal Article

Distribution and removal of antibiotic resistance genes during anaerobic sludge digestion with alkaline

Mengli Wang, Ruying Li, Qing Zhao

Journal Article

Environmental effects and risk control of antibiotic resistance genes in the organic solid waste aerobic

Journal Article

ultraviolet/chlorine process on microbial community structure, typical pathogens, and antibiotic resistance genes

Journal Article

Development of the expressed immunoglobulin μ chain repertoire during maturation of mice B cells

Jingwen LIANG,Yingfeng LUO,Yi SUN,Meng LEI,Bing ZHANG,Songnian HU,Yaofeng ZHAO

Journal Article

Distribution of antibiotic resistance genes and their association with bacteria and viruses in decentralized

Journal Article

Research progress in pathogenic genes of hereditary non-syndromic mid-frequency deafness

Wenjun Xia,Fei Liu,Duan Ma

Journal Article